gseaplot2 {enrichplot}R Documentation

gseaplot2

Description

GSEA plot that mimic the plot generated by broad institute's GSEA software

Usage

gseaplot2(x, geneSetID, title = "", color = "green", base_size = 11,
  rel_heights = c(1.5, 0.5, 1), subplots = 1:3, pvalue_table = FALSE,
  ES_geom = "line")

Arguments

x

gseaResult object

geneSetID

gene set ID

title

plot title

color

color of running enrichment score line

base_size

base font size

rel_heights

relative heights of subplots

subplots

which subplots to be displayed

pvalue_table

whether add pvalue table

ES_geom

geom for plotting running enrichment score, one of 'line' or 'dot'

Value

plot

Author(s)

Guangchuang Yu


[Package enrichplot version 1.4.0 Index]