RTCGA.miRNASeq

DOI: 10.18129/B9.bioc.RTCGA.miRNASeq    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see RTCGA.miRNASeq.

miRNASeq datasets from The Cancer Genome Atlas Project

Bioconductor version: 3.8

Package provides miRNASeq datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/miRNASeq#miRNASeq-DataOverview Data from 2015-11-01 snapshot.

Author: Witold Chodor <witoldchodor at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.miRNASeq")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RTCGA.miRNASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.miRNASeq")

 

HTML R Script Using RTCGA to download miRNASeq data as included in RTCGA.miRNASeq
PDF   Reference Manual

Details

biocViews AnnotationData, ExperimentData
Version 1.10.0
License GPL-2
Depends R (>= 3.3.0), RTCGA
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
BugReports https://github.com/RTCGA/RTCGA/issues
Depends On Me
Imports Me
Suggests Me RTCGA
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.miRNASeq_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.miRNASeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCGA.miRNASeq
Package Short Url http://bioconductor.org/packages/RTCGA.miRNASeq/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: