This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see sapFinder.
Bioconductor version: 3.8
sapFinder is developed to automate (1) variation-associated database construction, (2) database searching, (3) post-processing, (4) HTML-based report generation in shotgun proteomics.
Author: Shaohang Xu, Bo Wen
Maintainer: Shaohang Xu <xsh.skye at gmail.com>, Bo Wen <wenbo at genomics.cn>
Citation (from within R,
enter citation("sapFinder")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("sapFinder")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sapFinder")
R Script | sapFinder Vignette | |
Reference Manual | ||
Text | NEWS |
biocViews | ImmunoOncology, MassSpectrometry, Proteomics, RNASeq, ReportWriting, SNP, Software, Visualization |
Version | 1.20.1 |
In Bioconductor since | BioC 2.14 (R-3.1) (5 years) |
License | GPL-2 |
Depends | R (>= 3.0.0), rTANDEM(>= 1.3.5) |
Imports | pheatmap, Rcpp (>= 0.10.6), graphics, grDevices, stats, utils |
LinkingTo | Rcpp |
Suggests | RUnit, BiocGenerics, BiocStyle |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | sapFinder_1.20.1.tar.gz |
Windows Binary | sapFinder_1.20.1.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | sapFinder_1.20.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/sapFinder |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sapFinder |
Package Short Url | http://bioconductor.org/packages/sapFinder/ |
Package Downloads Report | Download Stats |
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