flagme

DOI: 10.18129/B9.bioc.flagme    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see flagme.

Analysis of Metabolomics GC/MS Data

Bioconductor version: 3.8

Fragment-level analysis of gas chromatography - mass spectrometry metabolomics data

Author: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Maintainer: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("flagme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flagme")

 

PDF	R Script	Using flagme -- Fragment-level analysis of GC-MS-based metabolomics data
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, ImmunoOncology, MassSpectrometry, Software
Version	1.38.1
In Bioconductor since	BioC 2.4 (R-2.9) (10 years)
License	LGPL (>= 2)
Depends	gcspikelite, xcms, CAMERA
Imports	gplots, graphics, MASS, methods, SparseM, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flagme_1.38.1.tar.gz
Windows Binary	flagme_1.38.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	flagme_1.38.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flagme
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flagme
Package Short Url	http://bioconductor.org/packages/flagme/
Package Downloads Report	Download Stats