crisprseekplus

DOI: 10.18129/B9.bioc.crisprseekplus    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see crisprseekplus.

crisprseekplus

Bioconductor version: 3.8

Bioinformatics platform containing interface to work with offTargetAnalysis and compare2Sequences in the CRISPRseek package, and GUIDEseqAnalysis.

Author: Sophie Wigmore <Sophie.Wigmore at umassmed.edu>, Alper Kucukural <alper.kucukural at umassmed.edu>, Lihua Julie Zhu <julie.zhu at umassmed.edu>, Michael Brodsky <Michael.Brodsky at umassmed.edu>, Manuel Garber <Manuel.Garber at umassmed.edu>

Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("crisprseekplus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("crisprseekplus")

 

HTML	R Script	DEBrowser Vignette
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GeneRegulation, SequenceMatching, Software
Version	1.8.0
In Bioconductor since	BioC 3.4 (R-3.3) (2.5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.3.0), shiny, shinyjs, CRISPRseek
Imports	DT, utils, GUIDEseq, GenomicRanges, GenomicFeatures, BiocManager, BSgenome, AnnotationDbi, hash
LinkingTo
Suggests	testthat, rmarkdown, knitr, R.rsp
SystemRequirements
Enhances
URL	https://github.com/UMMS-Biocore/crisprseekplus
BugReports	https://github.com/UMMS-Biocore/crisprseekplus/issues/new
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	crisprseekplus_1.8.0.tar.gz
Windows Binary	crisprseekplus_1.8.0.zip
Mac OS X 10.11 (El Capitan)	crisprseekplus_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/crisprseekplus
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/crisprseekplus
Package Short Url	http://bioconductor.org/packages/crisprseekplus/
Package Downloads Report	Download Stats