This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see SeqVarTools.
Bioconductor version: 3.8
An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.
Author: Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp
Maintainer: Stephanie M. Gogarten <sdmorris at uw.edu>
Citation (from within R,
enter citation("SeqVarTools")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SeqVarTools")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SeqVarTools")
R Script | Introduction to SeqVarTools | |
Reference Manual | ||
Text | NEWS |
biocViews | GeneticVariability, Genetics, SNP, Sequencing, Software |
Version | 1.20.2 |
In Bioconductor since | BioC 2.13 (R-3.0) (5.5 years) |
License | GPL-3 |
Depends | SeqArray |
Imports | grDevices, graphics, stats, methods, Biobase, gdsfmt, GenomicRanges, IRanges, S4Vectors, GWASExactHW, logistf, Matrix, dplyr, rlang, tidyr |
LinkingTo | |
Suggests | BiocGenerics, BiocStyle, RUnit, stringr |
SystemRequirements | |
Enhances | |
URL | https://github.com/smgogarten/SeqVarTools |
Depends On Me | |
Imports Me | GENESIS |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | SeqVarTools_1.20.2.tar.gz |
Windows Binary | SeqVarTools_1.20.2.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | SeqVarTools_1.20.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SeqVarTools |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SeqVarTools |
Package Short Url | http://bioconductor.org/packages/SeqVarTools/ |
Package Downloads Report | Download Stats |
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