This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MetaNeighbor.
Bioconductor version: 3.8
MetaNeighbor allows users to quantify cell type replicability across datasets using neighbor voting.
Author: Megan Crow [aut, cre], Sara Ballouz [ctb], Manthan Shah [ctb], Jesse Gillis [aut]
Maintainer: Manthan Shah <shah at cshl.edu>
Citation (from within R,
enter citation("MetaNeighbor")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MetaNeighbor")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaNeighbor")
R Script | MetaNeighbor user guide | |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | GO, GeneExpression, ImmunoOncology, MultipleComparison, SingleCell, Software, Transcriptomics |
Version | 1.2.1 |
In Bioconductor since | BioC 3.7 (R-3.5) (1 year) |
License | MIT + file LICENSE |
Depends | R (>= 3.5) |
Imports | beanplot (>= 1.2), gplots (>= 3.0.1), RColorBrewer (>= 1.1), stats (>= 3.4), SummarizedExperiment(>= 1.6.5), utils (>= 3.4) |
LinkingTo | |
Suggests | knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2) |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | MetaNeighbor_1.2.1.tar.gz |
Windows Binary | MetaNeighbor_1.2.1.zip |
Mac OS X 10.11 (El Capitan) | MetaNeighbor_1.2.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MetaNeighbor |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaNeighbor |
Package Short Url | http://bioconductor.org/packages/MetaNeighbor/ |
Package Downloads Report | Download Stats |
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