This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see HTSFilter.
Bioconductor version: 3.8
This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.
Author: Andrea Rau, Melina Gallopin, Gilles Celeux, and Florence Jaffrezic
Maintainer: Andrea Rau <andrea.rau at inra.fr>
Citation (from within R,
enter citation("HTSFilter")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("HTSFilter")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HTSFilter")
R Script | HTSFilter Vignette | |
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, Normalization, Preprocessing, RNASeq, Sequencing, Software |
Version | 1.22.1 |
In Bioconductor since | BioC 2.12 (R-3.0) (6 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4) |
Imports | edgeR(>= 3.9.14), DESeq2(>= 1.10.1), DESeq(>= 1.22.1), BiocParallel(>= 1.4.3), Biobase, utils, stats, grDevices, graphics, methods |
LinkingTo | |
Suggests | EDASeq(>= 2.1.4), BiocStyle, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | coseq |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | HTSFilter_1.22.1.tar.gz |
Windows Binary | HTSFilter_1.22.1.zip |
Mac OS X 10.11 (El Capitan) | HTSFilter_1.22.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/HTSFilter |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HTSFilter |
Package Short Url | http://bioconductor.org/packages/HTSFilter/ |
Package Downloads Report | Download Stats |
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