This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GenomicTuples.
Bioconductor version: 3.8
GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.
Author: Peter Hickey <peter.hickey at gmail.com>, with contributions from Marcin Cieslik and Hervé Pagès.
Maintainer: Peter Hickey <peter.hickey at gmail.com>
Citation (from within R,
enter citation("GenomicTuples")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("GenomicTuples")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicTuples")
HTML | R Script | GenomicTuplesIntroduction |
Reference Manual | ||
Text | NEWS |
biocViews | DataRepresentation, Infrastructure, Sequencing, Software |
Version | 1.16.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (4.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.3.0), GenomicRanges(>= 1.31.8), GenomeInfoDb(>= 1.15.2), S4Vectors(>= 0.17.25) |
Imports | methods, BiocGenerics(>= 0.21.2), Rcpp (>= 0.11.2), IRanges(>= 2.13.13), data.table, stats4 |
LinkingTo | Rcpp |
Suggests | testthat, knitr, BiocStyle, rmarkdown |
SystemRequirements | |
Enhances | |
URL | www.github.com/PeteHaitch/GenomicTuples |
BugReports | https://github.com/PeteHaitch/GenomicTuples/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | GenomicTuples_1.16.0.tar.gz |
Windows Binary | GenomicTuples_1.16.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | GenomicTuples_1.16.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GenomicTuples |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicTuples |
Package Short Url | http://bioconductor.org/packages/GenomicTuples/ |
Package Downloads Report | Download Stats |
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