BioSeqClass

DOI: 10.18129/B9.bioc.BioSeqClass    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BioSeqClass.

Classification for Biological Sequences

Bioconductor version: 3.8

Extracting Features from Biological Sequences and Building Classification Model

Author: Li Hong sysptm@gmail.com

Maintainer: Li Hong <sysptm at gmail.com>

Citation (from within R, enter citation("BioSeqClass")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("BioSeqClass")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioSeqClass")

 

PDF R Script Using the BioSeqClass Package
PDF   Reference Manual

Details

biocViews Classification, Software
Version 1.40.0
In Bioconductor since BioC 2.5 (R-2.10) (9.5 years)
License LGPL (>= 2.0)
Depends R (>= 2.10), scatterplot3d
Imports Biostrings, ipred, e1071, klaR, randomForest, class, tree, nnet, rpart, party, foreign, Biobase, utils, stats, grDevices
LinkingTo
Suggests scatterplot3d
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioSeqClass_1.40.0.tar.gz
Windows Binary BioSeqClass_1.40.0.zip
Mac OS X 10.11 (El Capitan) BioSeqClass_1.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BioSeqClass
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioSeqClass
Package Short Url http://bioconductor.org/packages/BioSeqClass/
Package Downloads Report Download Stats

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