This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BioNetStat.
Bioconductor version: 3.8
A package to perform differential network analysis, differential node analysis (differential coexpression analysis), network and metabolic pathways view.
Author: VinÃcius Jardim, Suzana Santos, André Fujita, and Marcos Buckeridge
Maintainer: Vinicius Jardim <viniciusjc at gmail.com>
Citation (from within R,
enter citation("BioNetStat")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("BioNetStat")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BioNetStat")
HTML | 1. Line command tutorial | |
HTML | 2. Interface tutorial | |
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, ImmunoOncology, Metabolomics, Microarray, Network, NetworkInference, Pathways, Proteomics, RNASeq, Sequencing, Software, SystemsBiology |
Version | 1.2.2 |
In Bioconductor since | BioC 3.7 (R-3.5) (1 year) |
License | GPL (>= 3) |
Depends | R (>= 3.5), shiny, igraph, shinyBS, pathview |
Imports | BiocParallel, RJSONIO, whisker, yaml, pheatmap, ggplot2, plyr, utils, stats, RColorBrewer, Hmisc, psych, knitr |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | http://github.com/jardimViniciusC/BioNetStat |
BugReports | http://github.com/jardimViniciusC/BioNetStat/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | BioNetStat_1.2.2.tar.gz |
Windows Binary | BioNetStat_1.2.2.zip |
Mac OS X 10.11 (El Capitan) | BioNetStat_1.2.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/BioNetStat |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BioNetStat |
Package Short Url | http://bioconductor.org/packages/BioNetStat/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: