BaseSpaceR

DOI: 10.18129/B9.bioc.BaseSpaceR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BaseSpaceR.

R SDK for BaseSpace RESTful API

Bioconductor version: 3.8

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author: Adrian Alexa

Maintainer: Jared O'Connell <joconnell at illumina.com>

Citation (from within R, enter citation("BaseSpaceR")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("BaseSpaceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BaseSpaceR")

 

PDF R Script BaseSpaceR
PDF   Reference Manual
Text   NEWS

Details

biocViews ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software
Version 1.26.0
In Bioconductor since BioC 2.12 (R-3.0) (6 years)
License Apache License 2.0
Depends R (>= 2.15.0), RCurl, RJSONIO
Imports methods
LinkingTo
Suggests RUnit, IRanges, Rsamtools
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BaseSpaceR_1.26.0.tar.gz
Windows Binary BaseSpaceR_1.26.0.zip
Mac OS X 10.11 (El Capitan) BaseSpaceR_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BaseSpaceR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BaseSpaceR
Package Short Url http://bioconductor.org/packages/BaseSpaceR/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: