BAGS

DOI: 10.18129/B9.bioc.BAGS    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BAGS.

A Bayesian Approach for Geneset Selection

Bioconductor version: 3.8

R package providing functions to perform geneset significance analysis over simple cross-sectional data between 2 and 5 phenotypes of interest.

Author: Alejandro Quiroz-Zarate

Maintainer: Alejandro Quiroz-Zarate <aquiroz at jimmy.harvard.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("BAGS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BAGS")

 

PDF	R Script	BAGS: A Bayesian Approach for Geneset Selection.
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bayesian, Software
Version	2.22.0
In Bioconductor since	BioC 2.13 (R-3.0) (5.5 years)
License	Artistic-2.0
Depends	R (>= 2.10), breastCancerVDX, Biobase
Imports
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BAGS_2.22.0.tar.gz
Windows Binary	BAGS_2.22.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	BAGS_2.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BAGS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BAGS
Package Short Url	http://bioconductor.org/packages/BAGS/
Package Downloads Report	Download Stats