ArrayTV

DOI: 10.18129/B9.bioc.ArrayTV    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ArrayTV.

Implementation of wave correction for arrays

Bioconductor version: 3.8

Wave correction for genotyping and copy number arrays

Author: Eitan Halper-Stromberg

Maintainer: Eitan Halper-Stromberg <Eitan177 at gmail.com>

Citation (from within R, enter citation("ArrayTV")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ArrayTV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayTV")

 

PDF R Script ArrayTV Vignette
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Software
Version 1.20.0
In Bioconductor since BioC 2.13 (R-3.0) (5.5 years)
License GPL (>= 2)
Depends R (>= 2.14)
Imports methods, foreach, S4Vectors(>= 0.9.25), IRanges(>= 2.13.24), DNAcopy, oligoClasses(>= 1.21.3)
LinkingTo
Suggests RColorBrewer, crlmm, ff, BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19, lattice, latticeExtra, RUnit, BiocGenerics
SystemRequirements
Enhances doMC, doSNOW, doParallel
URL
Depends On Me
Imports Me
Suggests Me VanillaICE
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ArrayTV_1.20.0.tar.gz
Windows Binary ArrayTV_1.20.0.zip
Mac OS X 10.11 (El Capitan) ArrayTV_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ArrayTV
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ArrayTV
Package Short Url http://bioconductor.org/packages/ArrayTV/
Package Downloads Report Download Stats

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