This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see AffiXcan.
Bioconductor version: 3.8
Impute a GReX (Genetically Regulated Expression) for a set of genes in a sample of individuals, using a method based on the Total Binding Affinity (TBA). Statistical models to impute GReX can be trained with a training dataset where the real total expression values are known.
Author: Alessandro Lussana [aut, cre]
Maintainer: Alessandro Lussana <alessandro.lussana at protonmail.com>
Citation (from within R,
enter citation("AffiXcan")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("AffiXcan")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AffiXcan")
HTML | R Script | AffiXcan |
Reference Manual |
biocViews | DimensionReduction, GeneExpression, GeneRegulation, Regression, Software, Transcription |
Version | 1.0.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (0.5 years) |
License | GPL-3 |
Depends | R (>= 3.5), SummarizedExperiment |
Imports | MultiAssayExperiment, BiocParallel |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | AffiXcan_1.0.0.tar.gz |
Windows Binary | AffiXcan_1.0.0.zip |
Mac OS X 10.11 (El Capitan) | AffiXcan_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/AffiXcan |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AffiXcan |
Package Short Url | http://bioconductor.org/packages/AffiXcan/ |
Package Downloads Report | Download Stats |
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