ARRmNormalization

DOI: 10.18129/B9.bioc.ARRmNormalization    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ARRmNormalization.

Adaptive Robust Regression normalization for Illumina methylation data

Bioconductor version: 3.8

Perform the Adaptive Robust Regression method (ARRm) for the normalization of methylation data from the Illumina Infinium HumanMethylation 450k assay.

Author: Jean-Philippe Fortin, Celia M.T. Greenwood, Aurelie Labbe.

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ARRmNormalization")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ARRmNormalization")

 

PDF	R Script	ARRmNormalization
PDF		Reference Manual

Details

biocViews	DNAMethylation, Microarray, Preprocessing, Software, TwoChannel
Version	1.22.0
In Bioconductor since	BioC 2.12 (R-3.0) (6 years)
License	Artistic-2.0
Depends	R (>= 2.15.1), ARRmData
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ARRmNormalization_1.22.0.tar.gz
Windows Binary	ARRmNormalization_1.22.0.zip
Mac OS X 10.11 (El Capitan)	ARRmNormalization_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ARRmNormalization
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ARRmNormalization
Package Short Url	http://bioconductor.org/packages/ARRmNormalization/
Package Downloads Report	Download Stats