anno_boxplot {ComplexHeatmap} | R Documentation |
Using boxplot as annotation
anno_boxplot(x, which = c("column", "row"), border = TRUE, gp = gpar(fill = "#CCCCCC"), ylim = NULL, outline = TRUE, pch = 16, size = unit(2, "mm"), axis = FALSE, axis_side = NULL, axis_gp = gpar(fontsize = 8), axis_direction = c("normal", "reverse"))
x |
a matrix or a list. If |
which |
is the annotation a column annotation or a row annotation? |
border |
whether show border of the annotation compoment |
gp |
graphic parameters |
ylim |
data ranges. |
outline |
whether draw outliers |
pch |
point type |
size |
point size |
axis |
whether add axis |
axis_side |
if it is placed as column annotation, value can only be "left" or "right". If it is placed as row annotation, value can only be "bottom" or "top". |
axis_gp |
graphic parameters for axis |
axis_direction |
if the annotation is row annotation, should the axis be from left to right (default) or follow the reversed direction? |
A graphic function which can be set in HeatmapAnnotation
constructor method.
Zuguang Gu <z.gu@dkfz.de>
mat = matrix(rnorm(32), nrow = 4) f = anno_boxplot(mat) grid.newpage(); f(1:8) f = anno_boxplot(mat, which = "row") grid.newpage(); f(1:4) lt = lapply(1:4, function(i) rnorm(8)) f = anno_boxplot(lt) grid.newpage(); f(1:4)