Bioconductor version: 3.7
Annotation resources make up a significant proportion of the Bioconductor project. And there are also a diverse set of online resources available which are accessed using specific packages. This walkthrough will describe the most popular of these resources and give some high level examples on how to use them.
Author: Marc RJ Carlson [aut], Herve Pages [aut], Sonali Arora [aut], Valerie Obenchain [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("annotation")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("annotation")
To view available workflows for the version of this package installed in your system, start R and enter:
browseVignettes("annotation")
HTML | R Script | Annotating Genomic Ranges |
HTML | R Script | Genomic Annotation Resources |
biocViews | AnnotationWorkflow, Workflow |
Version | 1.2.0 |
License | Artistic-2.0 |
Depends | R (>= 3.3.0), VariantAnnotation, AnnotationHub, Organism.dplyr, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.ensGene, org.Hs.eg.db, org.Mm.eg.db, Homo.sapiens, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome, TxDb.Athaliana.BioMart.plantsmart22 |
Imports | |
LinkingTo | |
Suggests | knitr, rmarkdown, BiocStyle |
SystemRequirements | |
Enhances | |
URL | http://bioconductor.org/help/workflows/annotation/Annotation_Resources/ |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
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