This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see sevenbridges.
Bioconductor version: 3.7
R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.
Author: Nan Xiao [aut, cre], Tengfei Yin [aut], Emile Young [ctb], Dusan Randjelovic [aut], Seven Bridges Genomics [cph, fnd]
Maintainer: Nan Xiao <nan.xiao at sevenbridges.com>
Citation (from within R,
enter citation("sevenbridges")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("sevenbridges")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sevenbridges")
HTML | R Script | Complete Guide for Seven Bridges API R Client |
HTML | R Script | Creating Your Docker Container and Command Line Interface (with docopt) |
HTML | R Script | Describe and Execute CWL Tools/Workflows in R |
HTML | R Script | Find Data on CGC via Data Exploerer, SPARQL, and Datasets API |
HTML | R Script | IDE Container: RStudio Server, Shiny Server, and More |
HTML | R Script | Master Tutorial: Use R for Cancer Genomics Cloud |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | DataImport, Software, ThirdPartyClient |
Version | 1.10.5 |
In Bioconductor since | BioC 3.3 (R-3.3) (2.5 years) |
License | Apache License 2.0 | file LICENSE |
Depends | methods, utils, stats |
Imports | httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, uuid, dplyr, shiny (>= 0.13), miniUI (>= 0.1.1), rstudioapi (>= 0.5) |
LinkingTo | |
Suggests | knitr, rmarkdown, testthat, readr, clipr |
SystemRequirements | |
Enhances | |
URL | https://www.sevenbridges.com https://sbg.github.io/sevenbridges-r/ https://github.com/sbg/sevenbridges-r |
BugReports | https://github.com/sbg/sevenbridges-r/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | sevenbridges_1.10.5.tar.gz |
Windows Binary | sevenbridges_1.10.5.zip |
Mac OS X 10.11 (El Capitan) | sevenbridges_1.10.5.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/sevenbridges |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sevenbridges |
Package Short Url | http://bioconductor.org/packages/sevenbridges/ |
Package Downloads Report | Download Stats |
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