esetVis

DOI: 10.18129/B9.bioc.esetVis    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see esetVis.

Visualizations of expressionSet Bioconductor object

Bioconductor version: 3.7

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

Author: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("esetVis")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("esetVis")

 

HTML	R Script	esetVis package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, DimensionReduction, Pathways, PrincipalComponent, Software, Visualization
Version	1.6.3
In Bioconductor since	BioC 3.4 (R-3.3) (2 years)
License	GPL-3
Depends
Imports	mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices, methods
LinkingTo
Suggests	ggplot2, ggvis, rbokeh, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	esetVis_1.6.3.tar.gz
Windows Binary	esetVis_1.6.3.zip
Mac OS X 10.11 (El Capitan)	esetVis_1.6.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/esetVis
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/esetVis
Package Short Url	http://bioconductor.org/packages/esetVis/
Package Downloads Report	Download Stats