RUVnormalize

DOI: 10.18129/B9.bioc.RUVnormalize    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see RUVnormalize.

RUV for normalization of expression array data

Bioconductor version: 3.7

RUVnormalize is meant to remove unwanted variation from gene expression data when the factor of interest is not defined, e.g., to clean up a dataset for general use or to do any kind of unsupervised analysis.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at univ-lyon1.fr>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RUVnormalize")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RUVnormalize")

 

PDF	R Script	RUVnormalize
PDF		Reference Manual
Text		NEWS

Details

biocViews	Normalization, Software, StatisticalMethod
Version	1.14.0
In Bioconductor since	BioC 3.0 (R-3.1) (4 years)
License	GPL-3
Depends	R (>= 2.10.0)
Imports	RUVnormalizeData, Biobase
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Enhances	spams
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RUVnormalize_1.14.0.tar.gz
Windows Binary	RUVnormalize_1.14.0.zip
Mac OS X 10.11 (El Capitan)	RUVnormalize_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RUVnormalize
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RUVnormalize
Package Short Url	http://bioconductor.org/packages/RUVnormalize/
Package Downloads Report	Download Stats