This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see MSGFgui.
Bioconductor version: 3.7
This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>
Citation (from within R,
enter citation("MSGFgui")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("MSGFgui")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSGFgui")
HTML | R Script | Using MSGFgui |
Reference Manual | ||
Text | NEWS |
biocViews | GUI, MassSpectrometry, Proteomics, Software, Visualization |
Version | 1.14.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (4 years) |
License | GPL (>= 2) |
Depends | mzR, xlsx |
Imports | shiny, mzID(>= 1.2), MSGFplus, shinyFiles (>= 0.4.0), tools |
LinkingTo | |
Suggests | knitr, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | RforProteomics |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | MSGFgui_1.14.0.tar.gz |
Windows Binary | MSGFgui_1.14.0.zip |
Mac OS X 10.11 (El Capitan) | MSGFgui_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MSGFgui |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MSGFgui |
Package Short Url | http://bioconductor.org/packages/MSGFgui/ |
Package Downloads Report | Download Stats |
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