This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see JunctionSeq.
Bioconductor version: 3.7
A Utility for Detection and Visualization of Differential Exon or Splice-Junction Usage in RNA-Seq data.
Author: Stephen Hartley [aut, cre] (PhD), Simon Anders [cph], Alejandro Reyes [cph]
Maintainer: Stephen Hartley <JunctionSeq-contact at list.nih.gov>
Citation (from within R,
enter citation("JunctionSeq")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("JunctionSeq")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("JunctionSeq")
JunctionSeq Vignette | ||
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | DifferentialExpression, RNASeq, Sequencing, Software |
Version | 1.10.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (2.5 years) |
License | file LICENSE |
Depends | R (>= 3.2.2), methods, SummarizedExperiment(>= 0.2.0), Rcpp (>= 0.11.0), RcppArmadillo (>= 0.3.4.4) |
Imports | DESeq2(>= 1.10.0), statmod, Hmisc, plotrix, stringr, Biobase(>= 2.30.0), locfit, BiocGenerics(>= 0.7.5), BiocParallel, genefilter, geneplotter, S4Vectors, IRanges, GenomicRanges |
LinkingTo | Rcpp, RcppArmadillo |
Suggests | MASS, knitr, JctSeqData, BiocStyle |
SystemRequirements | |
Enhances | Cairo, pryr |
URL | http://hartleys.github.io/JunctionSeq/index.html |
BugReports | https://github.com/hartleys/JunctionSeq/issues |
Depends On Me | |
Imports Me | PathwaySplice |
Suggests Me | JctSeqData |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | JunctionSeq_1.10.0.tar.gz |
Windows Binary | JunctionSeq_1.10.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | JunctionSeq_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/JunctionSeq |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/JunctionSeq |
Package Short Url | http://bioconductor.org/packages/JunctionSeq/ |
Package Downloads Report | Download Stats |
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