This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see DNAcopy.
Bioconductor version: 3.7
Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.
Author: Venkatraman E. Seshan, Adam Olshen
Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>
Citation (from within R,
enter citation("DNAcopy")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DNAcopy")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DNAcopy")
R Script | DNAcopy | |
Reference Manual |
biocViews | CopyNumberVariation, Microarray, Software |
Version | 1.54.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 13.5 years) |
License | GPL (>= 2) |
Depends | |
Imports | |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | CGHcall, cghMCR, Clonality, CRImage, PureCN, snapCGH |
Imports Me | ADaCGH2, AneuFinder, ArrayTV, ChAMP, cn.farms, CNAnorm, CNVrd2, contiBAIT, conumee, CopywriteR, GWASTools, MDTS, MEDIPS, MinimumDistance, QDNAseq, rCGH, Repitools, snapCGH |
Suggests Me | beadarraySNP, cn.mops, fastseg, genoset |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | DNAcopy_1.54.0.tar.gz |
Windows Binary | DNAcopy_1.54.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | DNAcopy_1.54.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DNAcopy |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DNAcopy |
Package Short Url | http://bioconductor.org/packages/DNAcopy/ |
Package Downloads Report | Download Stats |
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