This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see CTDquerier.
Bioconductor version: 3.7
Package to retrieve and visualize data from the Comparative Toxicogenomics Database (http://ctdbase.org/). The downloaded data is formated as DataFrames for further downstream analyses.
Author: Carles Hernandez-Ferrer [aut, cre], Jaun R. Gonzalez [aut]
Maintainer: Carles Hernandez-Ferrer <carles.hernandez at isglobal.org>
Citation (from within R,
enter citation("CTDquerier")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CTDquerier")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CTDquerier")
HTML | R Script | Case study on Environmental Chemicals and asthma-related genes |
HTML | R Script | CTDquerier: A package to retrieve CTDbase data for downstream analysis and data visualization |
HTML | R Script | Simple comparison between CTDquerier R package and CTDbase Batch Query web tool |
Reference Manual | ||
Text | LICENSE |
biocViews | BiomedicalInformatics, DataImport, DataRepresentation, GO, GeneSetEnrichment, Infrastructure, KEGG, Network, NetworkEnrichment, Pathways, Software |
Version | 1.0.0 |
License | MIT + file LICENSE |
Depends | R (>= 3.4.0) |
Imports | RCurl, stringr, S4Vectors, stringdist, ggplot2, igraph, utils, grid, gridExtra, methods, stats, BiocFileCache, rappdirs |
LinkingTo | |
Suggests | BiocStyle, knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | CTDquerier_1.0.0.tar.gz |
Windows Binary | CTDquerier_1.0.0.zip |
Mac OS X 10.11 (El Capitan) | CTDquerier_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/CTDquerier |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CTDquerier |
Package Short Url | http://bioconductor.org/packages/CTDquerier/ |
Package Downloads Report | Download Stats |
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