topPathways {paxtoolsr}R Documentation

Retrieve top pathways

Description

This command returns all "top" pathways.

Usage

topPathways(datasource = NULL, organism = NULL, verbose = FALSE)

Arguments

datasource

filter by data source (same as for 'search').

organism

organism filter (same as for 'search').

verbose

a boolean, display the command used to query Pathway Commons

Details

Pathways that are neither 'controlled' nor 'pathwayComponent' of another process.

Value

a data.frame with the following columns:

Examples

datasource <- "panther"
#results <- topPathways(datasource=datasource)


[Package paxtoolsr version 1.14.0 Index]