pplot {mQTL.NMR} | R Documentation |
Plot the results with a color scale y layer over 3 in 2D
pplot(z, title, ppm, res, LT = c(5,10,15,20))
z |
a matrix specifying metabolome genome-wide mQTL mapping results |
title |
figure title |
ppm |
a vector of chemical shift |
res |
mQTL results to be plotted (scanone object) |
LT |
quantil(res,probs), res: matrix of mQTL mapping results and probs: vector of probabilities |
plot of 2-D profile
Jean-Baptiste Cazier
# Download data files load_datafiles() # mQTL mapping results load(results) ## Plot 3D profile dev.new(width=5,height=5,pointsize=5) probs=c(0.95,0.99,0.999,0.9999) ## probabilities pplot(results$res,"Full 2D Profile", results$ppm, results$best, quantile(results$res,probs=probs))