circle_mQTL {mQTL.NMR} | R Documentation |
shows mQTL locations and relations with the metabolome on a central chemical axis
circle_mQTL(results, Th = 0, chr = 9, spacing = 25)
results |
a list containing mQTL mapping results generated by mQTL.NMR package |
Th |
a numerical parameter specifying LOD threshold |
chr |
a numerical value defining the chromosomes to show if necessary |
spacing |
a numerical parameter specifiying the sapcing between chromosomes on the circular genome |
A circuler plot where the central horizontal line corresponds to the NMR chemical axis, the circle represents the chromosomal positions, and the colored lines significant association between a shift and genomic location.
Lyamine Hedjazi
load_datafiles() load(results) circle_mQTL(results, Th=8,spacing=0)