mbrGet,MBR-method {RTNduals}R Documentation

Get information from individual slots in MBR object.

Description

Get information from individual slots in an MBR object and any available results from previous analysis.

Usage

## S4 method for signature 'MBR'
mbrGet(object, what = "status")

Arguments

object

A preprocessed object of class MBR

what

a single character value specifying which information should be retrieved from the slots. Options: "TNI", "regulatoryElements", "dualRegulons", "results", "para", "summary", "status", "dualsCorrelation", "dualsOverlap", and "dualsCorMatrix"

Value

Content from slots in the MBR object

Examples

##--- load a dataset for demonstration
data("dt4rtn", package = "RTN")
gexp <- dt4rtn$gexp
annot <- dt4rtn$gexpIDs
tfs <- dt4rtn$tfs[c("IRF8","IRF1","PRDM1","AFF3","E2F3")]

##--- run mbrPreprocess
rmbr <- mbrPreprocess(gexp=gexp, regulatoryElements = tfs, 
rowAnnotation=annot)

##--- get the 'TNI' slot using 'mbrGet'
tni <- mbrGet(rmbr, what="TNI")


[Package RTNduals version 1.4.4 Index]