getTaxonomy {OmaDB} | R Documentation |
The function to obtain the taxonomic tree from the database in the newick format that can be plugged into phylo.io for visualisation.
getTaxonomy(root = NULL, members, newick)
root |
optional parameter, the root of the node of interest |
members |
optional parameter, list of member ncbi taxon or UniProt IDs that should be included in the induced taxonomy. |
newick |
optional parameter, boolean |
an object containing the JSON keys as attributes
getTaxonomy() getTaxonomy(members="YEAST,ASHGO") getTaxonomy(root="Alveolata")