getGenomeAlignment {OmaDB} | R Documentation |
The function to obtain the list of orthologs for 2 whole genomes.
getGenomeAlignment(genome_id1, genome_id2, chr1 = NULL, chr2 = NULL)
genome_id1 |
an identifier for the first genome, which can be either its taxon id or UniProt species code |
genome_id2 |
an an identifier for the second genome, which can be either its taxon id or UniProt species code |
chr1 |
the chromosome of interest for the first genome |
chr2 |
the chromosome of interest for the second genome |
a dataframe containing information about both the entries in the orthologous pair and their relationship
getGenomeAlignment(genome_id1="YEAST",genome_id2="ASHGO") getGenomeAlignment(genome_id1="YEAST",genome_id2="ASHGO",chr1="1")