addFirstCdsOnLeaderEnds {ORFik}R Documentation

Extends leaders downstream

Description

When reassigning Transcript start sites, often you want to add downstream too. This is a simple way to do that

Usage

addFirstCdsOnLeaderEnds(fiveUTRs, cds)

Arguments

fiveUTRs

The 5' leader sequences as GRangesList

cds

If you want to extend 5' leaders downstream, to catch uorfs going into cds, include it.

Value

a GRangesList of cds exons added to ends


[Package ORFik version 1.0.0 Index]