txSeqsFromFa {ORFik}R Documentation

Get transcript sequence from a GrangesList and a faFile or BSgenome

Description

A small safety wrapper around GenomicFeatures::extractTranscriptSeqs

Usage

txSeqsFromFa(grl, faFile, is.sorted = FALSE)

Arguments

grl

a GRangesList object

faFile

FaFile or BSgenome used to find the transcripts,

is.sorted

a speedup, if you know the ranges are sorted

Value

a DNAStringSet of the transcript sequences


[Package ORFik version 1.0.0 Index]