downstreamOfPerGroup {ORFik} | R Documentation |
Per group get the part downstream of position defined in downstreamOf downstreamOf(tx, ORFik:::stopSites(cds, asGR = F)) will return the 3' utrs per transcript as GRangesList, usually used for interesting parts of the transcripts, like upstream open reading frames(uorf). downstreamOf +/- 1 is start/end site of transformed tx's, depending on strand
downstreamOfPerGroup(tx, downstreamOf)
tx |
a |
downstreamOf |
a vector of integers, for each group in tx, where is the new start point of first valid exon. |
a GRangesList of downstream part