subsetSwitchAnalyzeRlist {IsoformSwitchAnalyzeR}R Documentation

A function which subset all enteries in a switchAnalyzeRlist.

Description

This function allows the user to remove data from all entereis in a switchAnalyzeRlist about isoforms that are no longer of interest.

Usage

subsetSwitchAnalyzeRlist(
    switchAnalyzeRlist,
    subset
)

Arguments

switchAnalyzeRlist

A switchAnalyzeRlist object.

subset

logical expression indicating which rows in the isoformFeatures entry should be keep. The rest of the switchAnalyzeRlist is then reduced to only contain the matching information.

Value

A SwitchAnalyzeRlist only containing information about the isoforms (in their specific comparisons) indeicated with TRUE in the .

Author(s)

Kristoffer Vitting-Seerup

References

Vitting-Seerup et al. The Landscape of Isoform Switches in Human Cancers. Mol. Cancer Res. (2017).

See Also

createSwitchAnalyzeRlist
preFilter


[Package IsoformSwitchAnalyzeR version 1.2.0 Index]