extractCalibrationStatus {IsoformSwitchAnalyzeR} | R Documentation |
This function allows the user to extract information about whether the p-values were calibrated as described in Ferguson et al or not.
extractCalibrationStatus( switchAnalyzeRlist )
switchAnalyzeRlist |
A |
A data.frame where it for each comparison was indicated (via a logical) whether the p-value correction was performed or not.
Kristoffer Vitting-Seerup
Vitting-Seerup et al. The Landscape of Isoform Switches in Human Cancers. Mol. Cancer Res. (2017).
Ferguson JP, Palejev D: P-value calibration fro multiple testing problems in genomics. Stat. Appl. Genet. Mol. Biol. 2014, 13:659-673.
# Load example data and prefilter data("exampleSwitchList") exampleSwitchList <- preFilter(exampleSwitchList) # Perfom test exampleSwitchListAnalyzed <- isoformSwitchTest(exampleSwitchList) # extract whether p-value callibration was performed extractCalibrationStatus(exampleSwitchListAnalyzed)