seqc

DOI: 10.18129/B9.bioc.seqc    

RNA-seq data generated from SEQC (MAQC-III) study

Bioconductor version: Release (3.6)

The SEQC/MAQC-III Consortium has produced benchmark RNA-seq data for the assessment of RNA sequencing technologies and data analysis methods (Nat Biotechnol, 2014). Billions of sequence reads have been generated from ten different sequencing sites. This package contains the summarized read count data for ~2000 sequencing libraries. It also includes all the exon-exon junctions discovered from the study. TaqMan RT-PCR data for ~1000 genes and ERCC spike-in sequence data are included in this package as well.

Author: Yang Liao and Wei Shi

Maintainer: Yang Liao <liao at wehi.edu.au> and Wei Shi <shi at wehi.edu.au>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqc")

 

PDF	R Script	SEQC Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, RNASeqData, SequencingData, qPCRData
Version	1.12.0
License	GPL-3
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://bioconductor.org/packages/release/data/experiment/html/seqc.html
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	seqc_1.12.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/seqc
Package Short Url	http://bioconductor.org/packages/seqc/
Package Downloads Report	Download Stats