etec16s

DOI: 10.18129/B9.bioc.etec16s    

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

Bioconductor version: Release (3.6)

16S rRNA gene sequencing data to study changes in the faecal microbiota of 12 volunteers during a human challenge study with ETEC (H10407) and subsequent treatment with ciprofloxacin.

Author: Joseph N. Paulson

Maintainer: Joseph N. Paulson <jpaulson at jimmy.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("etec16s")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("etec16s")

 

PDF	R Script	etec16s
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, MicrobiomeData, SequencingData
Version	1.6.0
License	Artistic-2.0
Depends	R (>= 3.3), Biobase, metagenomeSeq(>= 1.12.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	metavizr
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	etec16s_1.6.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/etec16s
Package Short Url	http://bioconductor.org/packages/etec16s/
Package Downloads Report	Download Stats