This function normalizes raw count matrix using
DESeq2::rlog()
function from DESeq2::DESeq2-package.
isoNorm(ids, formula = NULL)
ids | Object of class IsomirDataSeq. |
---|---|
formula | Formula that will be used for normalization. |
IsomirDataSeq object with the normalized
count matrix in a slot. The normalized matrix
can be access with counts(ids, norm=TRUE)
.
#>#>#> pc2 pt2 pt7 pc1 pt6 pc3 #> hsa-let-7a-2-3p 3.359390 3.071367 2.897433 2.891080 2.701001 3.034015 #> hsa-let-7a-3p 10.286097 10.001767 9.713809 9.556400 9.455658 9.568679 #> hsa-let-7a-5p 18.864299 18.704379 18.435450 18.146873 18.253761 18.144663 #> hsa-let-7b-3p 11.237055 10.826430 10.220776 9.991825 10.174342 10.025003 #> hsa-let-7b-5p 16.620809 16.392974 15.998464 15.936787 15.814123 15.858538 #> hsa-let-7c-3p 5.321446 5.080029 5.549875 5.232819 5.484454 5.271296 #> pt3 pt5 pt4 pc5 pc4 pc7 #> hsa-let-7a-2-3p 2.946939 2.799358 2.310709 3.217075 3.221739 2.770960 #> hsa-let-7a-3p 10.082313 9.639452 9.625344 10.332679 9.550486 9.948226 #> hsa-let-7a-5p 18.615203 18.124950 18.304688 18.626690 18.307934 18.210683 #> hsa-let-7b-3p 10.650875 10.098523 9.983959 11.092818 10.362724 10.480457 #> hsa-let-7b-5p 16.254793 15.748570 15.823459 16.298281 15.979812 15.883865 #> hsa-let-7c-3p 5.181525 5.240958 5.299531 5.354279 5.210706 5.450914 #> pc6 pt1 #> hsa-let-7a-2-3p 3.224440 2.703139 #> hsa-let-7a-3p 9.773393 9.900004 #> hsa-let-7a-5p 18.223200 18.156654 #> hsa-let-7b-3p 10.278231 10.424200 #> hsa-let-7b-5p 15.892572 15.811066 #> hsa-let-7c-3p 5.243474 5.309992