wateRmelon

DOI: 10.18129/B9.bioc.wateRmelon    

Illumina 450 methylation array normalization and metrics

Bioconductor version: Release (3.6)

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.

Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic, Tyler Gorrie-Stone, Louis El Khoury

Maintainer: Leo <lschal at essex.ac.uk>

Citation (from within R, enter citation("wateRmelon")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("wateRmelon")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("wateRmelon")

 

PDF R Script The \Rpackage{wateRmelon} Package
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.22.1
In Bioconductor since BioC 2.12 (R-3.0) (5 years)
License GPL-3
Depends R (>= 2.10), Biobase, limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19, illuminaio
Imports Biobase
LinkingTo
Suggests RPMM
SystemRequirements
Enhances minfi
URL
Depends On Me bigmelon, skewr
Imports Me ChAMP, ENmix
Suggests Me RnBeads
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package wateRmelon_1.22.1.tar.gz
Windows Binary wateRmelon_1.22.1.zip
Mac OS X 10.11 (El Capitan) wateRmelon_1.22.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/wateRmelon
Package Short Url http://bioconductor.org/packages/wateRmelon/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: