viper

DOI: 10.18129/B9.bioc.viper    

Virtual Inference of Protein-activity by Enriched Regulon analysis

Bioconductor version: Release (3.6)

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("viper")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("viper")

 

PDF	R Script	Using VIPER
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version	1.12.0
In Bioconductor since	BioC 2.14 (R-3.1) (4 years)
License	file LICENSE
Depends	R (>= 2.14.0), Biobase, methods
Imports	mixtools, stats, parallel, e1071, KernSmooth
LinkingTo
Suggests	bcellViper
SystemRequirements
Enhances
URL
Depends On Me	aracne.networks, vulcan
Imports Me	diggit, diggitdata
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	viper_1.12.0.tar.gz
Windows Binary	viper_1.12.0.zip
Mac OS X 10.11 (El Capitan)	viper_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/viper
Package Short Url	http://bioconductor.org/packages/viper/
Package Downloads Report	Download Stats