Bioconductor version: Release (3.6)
traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.
Author: Li Chen, Zhaohui S.Qin
Maintainer: li chen<li.chen at emory.edu>
Citation (from within R,
enter citation("traseR")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("traseR")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("traseR")
R Script | Perform GWAS trait-associated SNP enrichment analyses in genomic intervals | |
Reference Manual |
biocViews | Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software |
Version | 1.8.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (2.5 years) |
License | GPL |
Depends | R (>= 3.2.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19 |
Imports | |
LinkingTo | |
Suggests | BiocStyle, RUnit, BiocGenerics |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | traseR_1.8.0.tar.gz |
Windows Binary | traseR_1.8.0.zip |
Mac OS X 10.11 (El Capitan) | traseR_1.8.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/traseR |
Package Short Url | http://bioconductor.org/packages/traseR/ |
Package Downloads Report | Download Stats |
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