switchde

DOI: 10.18129/B9.bioc.switchde    

Switch-like differential expression across single-cell trajectories

Bioconductor version: Release (3.6)

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("switchde")

Documentation

HTML	R Script	An overview of the switchde package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, RNASeq, Regression, SingleCell, Software, Transcriptomics
Version	1.4.0
In Bioconductor since	BioC 3.4 (R-3.3) (1.5 years)
License	GPL (>= 2)
Depends	R (>= 3.4), SingleCellExperiment
Imports	SummarizedExperiment, dplyr, ggplot2, methods, stats
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr
SystemRequirements
Enhances
URL	https://github.com/kieranrcampbell/switchde
BugReports	https://github.com/kieranrcampbell/switchde
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	switchde_1.4.0.tar.gz
Windows Binary	switchde_1.4.0.zip
Mac OS X 10.11 (El Capitan)	switchde_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/switchde
Package Short Url	http://bioconductor.org/packages/switchde/
Package Downloads Report	Download Stats