Bioconductor version: Release (3.6)
An R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.
Author: Johannes Waage <johannes.waage at gmail.com>, Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>
Maintainer: Johannes Waage <johannes.waage at gmail.com>, Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>
Citation (from within R,
enter citation("spliceR")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("spliceR")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spliceR")
R Script | spliceR Vignette | |
Reference Manual | ||
Text | NEWS |
biocViews | AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, Sequencing, Software, Transcription, Visualization |
Version | 1.20.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (4.5 years) |
License | GPL (>=2) |
Depends | R (>= 2.15.0), methods, cummeRbund, rtracklayer, VennDiagram, RColorBrewer, plyr |
Imports | GenomicRanges, IRanges |
LinkingTo | |
Suggests | BSgenome.Hsapiens.UCSC.hg19, BSgenome |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | IsoformSwitchAnalyzeR |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | spliceR_1.20.0.tar.gz |
Windows Binary | spliceR_1.20.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | spliceR_1.20.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/spliceR |
Package Short Url | http://bioconductor.org/packages/spliceR/ |
Package Downloads Report | Download Stats |
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