Bioconductor version: Release (3.6)
Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.
Author: Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne
Maintainer: John Marioni <marioni at uchicago.edu>
Citation (from within R,
enter citation("snapCGH")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("snapCGH")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("snapCGH")
R Script | Segmentation Overview | |
Reference Manual |
biocViews | CopyNumberVariation, Microarray, Preprocessing, Software, TwoChannel |
Version | 1.48.0 |
In Bioconductor since | BioC 1.8 (R-2.3) (12 years) |
License | GPL |
Depends | limma, DNAcopy, methods |
Imports | aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, stats, tilingArray, utils |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | ADaCGH2 |
Suggests Me | beadarraySNP |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | snapCGH_1.48.0.tar.gz |
Windows Binary | snapCGH_1.48.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | snapCGH_1.48.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/snapCGH |
Package Short Url | http://bioconductor.org/packages/snapCGH/ |
Package Downloads Report | Download Stats |
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