seqLogo

DOI: 10.18129/B9.bioc.seqLogo    

Sequence logos for DNA sequence alignments

Bioconductor version: Release (3.6)

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Author: Oliver Bembom

Maintainer: Oliver Bembom <oliver.bembom at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqLogo")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqLogo")

 

PDF	R Script	Sequence logos for DNA sequence alignments
PDF		Reference Manual

Details

biocViews	SequenceMatching, Software
Version	1.44.0
In Bioconductor since	BioC 2.0 (R-2.5) (11 years)
License	LGPL (>= 2)
Depends	methods, grid
Imports	stats4
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	motifRG, rGADEM
Imports Me	IntEREst, motifRG, PWMEnrich, rGADEM, riboSeqR, spliceSites, SPLINTER, TFBSTools
Suggests Me	BCRANK, DiffLogo, Logolas, motifcounter, MotifDb
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	seqLogo_1.44.0.tar.gz
Windows Binary	seqLogo_1.44.0.zip
Mac OS X 10.11 (El Capitan)	seqLogo_1.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/seqLogo
Package Short Url	http://bioconductor.org/packages/seqLogo/
Package Downloads Report	Download Stats