Bioconductor version: Release (3.6)
Statistical methods for detection of differential splicing (differential exon usage) in RNA-seq and exon microarray data, using L1-regularization (lasso) to improve power.
Author: Lukas M. Weber [aut, cre]
Maintainer: Lukas M. Weber <lukmweber at gmail.com>
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enter citation("regsplice")
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R Script | Example workflow for regsplice package | |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | AlternativeSplicing, DifferentialExpression, DifferentialSplicing, ExonArray, ExperimentalDesign, Microarray, RNASeq, Sequencing, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (1.5 years) |
License | MIT + file LICENSE |
Depends | |
Imports | glmnet, SummarizedExperiment, S4Vectors, limma, edgeR, stats, pbapply, utils, methods |
LinkingTo | |
Suggests | testthat, BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/lmweber/regsplice |
BugReports | https://github.com/lmweber/regsplice/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | regsplice_1.4.0.tar.gz |
Windows Binary | regsplice_1.4.0.zip |
Mac OS X 10.11 (El Capitan) | regsplice_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/regsplice |
Package Short Url | http://bioconductor.org/packages/regsplice/ |
Package Downloads Report | Download Stats |
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