Bioconductor version: Release (3.6)
This package provides a function to infer pathway activity from gene expression using PROGENy. It contains the linear model we inferred in the publication "Perturbation-response genes reveal signaling footprints in cancer gene expression".
Author: Michael Schubert <mschu.dev at gmail.com>
Maintainer: Michael Schubert <mschu.dev at gmail.com>
Citation (from within R,
enter citation("progeny")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("progeny")
HTML | R Script | narray Usage Examples |
Reference Manual | ||
Text | LICENSE |
biocViews | FunctionalPrediction, GeneExpression, GeneRegulation, Software, SystemsBiology |
Version | 1.0.0 |
License | Apache License (== 2.0) | file LICENSE |
Depends | R (>= 3.4.0) |
Imports | Biobase |
LinkingTo | |
Suggests | airway, biomaRt, BiocFileCache, broom, DESeq2, dplyr, knitr, readr, readxl |
SystemRequirements | |
Enhances | |
URL | https://github.com/saezlab/progeny |
BugReports | https://github.com/saezlab/progeny/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | progeny_1.0.0.tar.gz |
Windows Binary | progeny_1.0.0.zip |
Mac OS X 10.11 (El Capitan) | progeny_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/progeny |
Package Short Url | http://bioconductor.org/packages/progeny/ |
Package Downloads Report | Download Stats |
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