Bioconductor version: Release (3.6)
Algorithms to convert a gene expression array provided as an expression table or a GEO reference to a 'pathway fingerprint', a vector of discrete ternary scores representing high (1), low(-1) or insignificant (0) expression in a suite of pathways.
Author: Gabriel Altschuler
Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
Citation (from within R,
enter citation("pathprint")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("pathprint")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathprint")
R Script | pathprint | |
Reference Manual | ||
Text | NEWS |
biocViews | GeneExpression, KEGG, Reactome, Software, Transcription |
Version | 1.6.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (1 year) |
License | GPL |
Depends | R (>= 3.4) |
Imports | stats, utils |
LinkingTo | |
Suggests | ALL, GEOquery, pathprintGEOData, SummarizedExperiment |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | pathprintGEOData |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | pathprint_1.6.0.tar.gz |
Windows Binary | pathprint_1.6.0.zip |
Mac OS X 10.11 (El Capitan) | pathprint_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/pathprint |
Package Short Url | http://bioconductor.org/packages/pathprint/ |
Package Downloads Report | Download Stats |
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