Bioconductor version: Release (3.6)
A graphical user interface that facilitates the dimensional reduction method based on the t-distributed stochastic neighbor embedding (t-SNE) algorithm, for categorical analysis of mass cytometry data. With One-SENSE, measured parameters are grouped into predefined categories, and cells are projected onto a space composed of one dimension for each category. Each dimension is informative and can be annotated through the use of heatplots aligned in parallel to each axis, allowing for simultaneous visualization of two catergories across a two-dimensional plot. The cellular occupancy of the resulting plots alllows for direct assessment of the relationships between the categories.
Author: Cheng Yang, Evan Newell, Yong Kee Tan
Maintainer: Yong Kee Tan <yongkee.t at gmail.com>
Citation (from within R,
enter citation("oneSENSE")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("oneSENSE")
HTML | R Script | Introduction to oneSENSE GUI |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | DimensionReduction, FlowCytometry, GUI, Software |
Version | 1.0.0 |
License | GPL (>=3) |
Depends | R (>= 3.4), webshot, shiny, shinyFiles, scatterplot3d |
Imports | Rtsne, plotly, gplots, grDevices, graphics, stats, utils, methods, flowCore |
LinkingTo | |
Suggests | knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | oneSENSE_1.0.0.tar.gz |
Windows Binary | oneSENSE_1.0.0.zip |
Mac OS X 10.11 (El Capitan) | oneSENSE_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/oneSENSE |
Package Short Url | http://bioconductor.org/packages/oneSENSE/ |
Package Downloads Report | Download Stats |
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