nudge

DOI: 10.18129/B9.bioc.nudge    

Normal Uniform Differential Gene Expression detection

Bioconductor version: Release (3.6)

Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

Author: N. Dean <nemad at stat.washington.edu> and A. E. Raftery <raftery at stat.washington.edu>

Maintainer: N. Dean <nemad at stat.washington.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nudge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nudge")

 

PDF	R Script	nudge Overview
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, Software, TwoChannel
Version	1.44.0
In Bioconductor since	BioC 1.8 (R-2.3) (12 years)
License	GPL-2
Depends
Imports	stats
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	nudge_1.44.0.tar.gz
Windows Binary	nudge_1.44.0.zip
Mac OS X 10.11 (El Capitan)	nudge_1.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/nudge
Package Short Url	http://bioconductor.org/packages/nudge/
Package Downloads Report	Download Stats