Bioconductor version: Release (3.6)
Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki.
Author: Alicia Schep [aut, cre], Stanford University [cph]
Maintainer: Alicia Schep <aschep at gmail.com>
Citation (from within R,
enter citation("motifmatchr")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("motifmatchr")
HTML | R Script | motifmatchr |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | MotifAnnotation, Software |
Version | 1.0.1 |
License | GPL-3 + file LICENSE |
Depends | R (>= 3.3) |
Imports | Matrix, Rcpp, methods, TFBSTools, Biostrings, BSgenome, S4Vectors, SummarizedExperiment, GenomicRanges, IRanges, Rsamtools, GenomeInfoDb |
LinkingTo | Rcpp, RcppArmadillo |
Suggests | testthat, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19 |
SystemRequirements | C++11 |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | chromVAR |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | motifmatchr_1.0.1.tar.gz |
Windows Binary | motifmatchr_1.0.1.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | motifmatchr_1.0.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/motifmatchr |
Package Short Url | http://bioconductor.org/packages/motifmatchr/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.6 | Source Archive |
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