Bioconductor version: Release (3.6)
metagenomeFeatures was developed for use in exploring the taxonomic annotations for a marker-gene metagenomic sequence dataset. The package can be used to explore the taxonomic composition of a marker-gene database or annotated sequences from a marker-gene metagenome experiment.
Author: Nathan D. Olson, Joseph Nathaniel Paulson, Hector Corrada Bravo
Maintainer: Nathan D. Olson <nolson at umiacs.umd.edu>
Citation (from within R,
enter citation("metagenomeFeatures")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("metagenomeFeatures")
HTML | R Script | Example 16S Annotation Workflow |
HTML | R Script | Vignette Title |
Reference Manual | ||
Text | NEWS |
biocViews | Annotation, Infrastructure, Metagenomics, Microbiome, Sequencing, Software |
Version | 1.10.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (2.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4), Biobase(>= 2.17.8) |
Imports | Biostrings(>= 2.36.4), ShortRead(>= 1.26.0), dplyr (>= 0.7.0), dbplyr (>= 1.0.0), stringr (>= 1.0.0), lazyeval (>= 0.1.10), RSQLite (>= 1.0.0), magrittr (>= 1.5), methods (>= 3.3.1), lattice (>= 0.20.33), metagenomeSeq(>= 1.14.2), ape (>= 3.5), purrr (>= 0.2.2) |
LinkingTo | |
Suggests | knitr (>= 1.11), msd16s(>= 0.102.0), testthat (>= 0.10.0), rmarkdown (>= 1.3) |
SystemRequirements | |
Enhances | |
URL | https://github.com/HCBravoLab/metagenomeFeatures |
BugReports | https://github.com/HCBravoLab/metagenomeFeatures/issues |
Depends On Me | |
Imports Me | greengenes13.5MgDb |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | metagenomeFeatures_1.10.0.tar.gz |
Windows Binary | metagenomeFeatures_1.10.0.zip |
Mac OS X 10.11 (El Capitan) | metagenomeFeatures_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/metagenomeFeatures |
Package Short Url | http://bioconductor.org/packages/metagenomeFeatures/ |
Package Downloads Report | Download Stats |
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