metabomxtr

DOI: 10.18129/B9.bioc.metabomxtr    

A package to run mixture models for truncated metabolomics data with normal or lognormal distributions

Bioconductor version: Release (3.6)

The functions in this package return optimized parameter estimates and log likelihoods for mixture models of truncated data with normal or lognormal distributions.

Author: Michael Nodzenski, Anna Reisetter, Denise Scholtens

Maintainer: Michael Nodzenski <michael.nodzenski at northwestern.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metabomxtr")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metabomxtr")

 

PDF	R Script	metabomxtr
PDF	R Script	mixnorm
PDF		Reference Manual
Text		NEWS

Details

biocViews	MassSpectrometry, Metabolomics, Software
Version	1.12.0
In Bioconductor since	BioC 3.0 (R-3.1) (3.5 years)
License	GPL-2
Depends	methods, Biobase
Imports	optimx, Formula, plyr, multtest, BiocParallel, ggplot2
LinkingTo
Suggests	xtable, reshape2
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	metabomxtr_1.12.0.tar.gz
Windows Binary	metabomxtr_1.12.0.zip
Mac OS X 10.11 (El Capitan)	metabomxtr_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/metabomxtr
Package Short Url	http://bioconductor.org/packages/metabomxtr/
Package Downloads Report	Download Stats