iCOBRA

DOI: 10.18129/B9.bioc.iCOBRA    

Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: Release (3.6)

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. It also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iCOBRA")

Documentation

HTML	R Script	iCOBRA User Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, Software
Version	1.6.0
In Bioconductor since	BioC 3.3 (R-3.3) (2 years)
License	GPL (>=2)
Depends	R (>= 3.4)
Imports	shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2, ggplot2 (>= 2.0.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR
LinkingTo
Suggests	knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iCOBRA_1.6.0.tar.gz
Windows Binary	iCOBRA_1.6.0.zip
Mac OS X 10.11 (El Capitan)	iCOBRA_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iCOBRA
Package Short Url	http://bioconductor.org/packages/iCOBRA/
Package Downloads Report	Download Stats